GgaEX0004066 @ galGal3
Exon Skipping
Gene
ENSGALG00000003135 | Q90717_CHICK
Description
NA
Coordinates
chr6:10124232-10127645:+
Coord C1 exon
chr6:10124232-10124456
Coord A exon
chr6:10125197-10125295
Coord C2 exon
chr6:10127491-10127645
Length
99 bp
Sequences
Splice sites
3' ss Seq
GCTGCATGGATGTTATTCAGTAA
3' ss Score
0.69
5' ss Seq
TGGGTAGGA
5' ss Score
5.12
Exon sequences
Seq C1 exon
TTTCCTGGTTAGTTTTATGGTCGATGCACGTGGGGGTTCGATGAGAGGAAGTCGTCATCATGGAATGAGAATTATCATCCCACCACGCAAATGCACAGCGCCAACCCGCATCACCTGCCGCTTGGTAAAGAGGCATAAGCTGGCCAGCCCACCACCAATGGTTGAAGGAGAAGGATTAGCAAGTAGACTTGTAGAAATGGGGCCGGCAGGGGCACAATTCTTAGG
Seq A exon
TAAACTGCATCTTCCTAAATCTCCTCCCCCTCTAAATGAGGGCGAGAGCATGGTTAGCCGAATCCTGCAGCTTGGTCCACAAGGAACAAAATTTATTGG
Seq C2 exon
CCCTGTCATAGTGGAAATCCCACATTTTGGATCAATGCGAGGAAAGGAAAGAGAGTTAATCGTACTTCGAAGTGAAAATGGCGAAACGTGGAAGGAGCACCAGTATGACAGCAAGCATGAAGACTTAACTGAAGTACTCAATGGCATGGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135-'35-35,'35-34,36-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.180 A=0.500 C2=0.327
Domain overlap (PFAM):
C1:
PF0079115=ZU5=FE(91.5=100),PF0079115=ZU5=PU(0.1=0.0)
A:
PF0079115=ZU5=PD(6.1=14.7),PF0079115=ZU5=PU(53.2=97.1)
C2:
PF0079115=ZU5=PD(26.7=52.8)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACCTGCCGCTTGGTAAAG
R:
ACTCTCTTTCCTTTCCTCGCA
Band lengths:
172-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]