DreEX0013133 @ danRer10
Exon Skipping
Gene
ENSDARG00000077582 | ank3b
Description
ankyrin 3b [Source:ZFIN;Acc:ZDB-GENE-060621-2]
Coordinates
chr12:7644242-7650504:-
Coord C1 exon
chr12:7650280-7650504
Coord A exon
chr12:7646676-7646774
Coord C2 exon
chr12:7644242-7644396
Length
99 bp
Sequences
Splice sites
3' ss Seq
GCTGCATGGAAATAATACAGTAA
3' ss Score
-2.62
5' ss Seq
GGGGTAGGA
5' ss Score
4.36
Exon sequences
Seq C1 exon
GTTTTTGGTGAGCTTCATGGTGGACGCACGTGGCGGGTCGATGCGAGGAAGTCGCCACAATGGCATGCGGATCATCATCCCGCCTCGCAAATGCACTGCGCCAACACGTATCACATGCCGTCTGGTCAAGAGGCACAAGCTGGCGTCGCTGCCACCCATGGTGGAGGGAGAGGGCCTGGCGAGCAGGCTGGTGGAGGTGGGCCCAGCAGGGGCTCAGTTTCTGGG
Seq A exon
TAAACTCCATCTACCCCGAAACCTCCCGCCTCTTAGCGAGGGCGAGAGCTACGTTAGCCGAATCCTGCAGCTCGGGCCGCGAGGAACGAAATTTTCGGG
Seq C2 exon
CCCCGTGATTGTGGAGATCCCTCATTTTGGGTCCATGAGAGGGAAAGAGCGAGAACTCATTATGCTCAGGAGCGAAAACGGTGAGACCTGGAAGGAGCATCATTACGACTGCAAAACTGAAGACCTCAATGAGCTACTCAATGGCATGGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077582-'42-37,'42-36,43-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.096 A=0.000 C2=0.189
Domain overlap (PFAM):
C1:
PF0079115=ZU5=FE(71.4=100)
A:
PF0079115=ZU5=PD(7.2=17.6),PF0079115=ZU5=PU(52.5=94.1)
C2:
PF0079115=ZU5=PD(26.7=52.8)
Main Inclusion Isoform:
ENSDART00000088100fB1181
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTATCACATGCCGTCTGGTC
R:
TCGCTCTTTCCCTCTCATGGA
Band lengths:
171-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]