HsaEX0004147 @ hg19
Exon Skipping
Gene
ENSG00000151150 | ANK3
Description
ankyrin 3, node of Ranvier (ankyrin G) [Source:HGNC Symbol;Acc:494]
Coordinates
chr10:61865663-61868812:-
Coord C1 exon
chr10:61868588-61868812
Coord A exon
chr10:61867946-61868044
Coord C2 exon
chr10:61865663-61865817
Length
99 bp
Sequences
Splice sites
3' ss Seq
GCTGCATGGATGTTATTCAGTAA
3' ss Score
0.69
5' ss Seq
TGGGTAGGA
5' ss Score
5.12
Exon sequences
Seq C1 exon
GTTTCTGGTTAGCTTTATGGTGGACGCGAGAGGGGGCTCCATGAGAGGAAGCCGTCATCACGGGATGAGAATCATCATTCCTCCACGCAAGTGTACGGCCCCCACTCGAATCACCTGCCGTTTGGTAAAGAGACATAAACTGGCCAACCCACCCCCCATGGTGGAAGGAGAGGGATTAGCCAGTAGGCTGGTAGAAATGGGTCCTGCAGGGGCACAATTTTTAGG
Seq A exon
TAAACTGCATCTTCCTACCAATCCTCCCCCTGTAAATGAGGGTGAGAGCTTGGTTAGCCGAATCCTGCAGCTTGGGCCTCAAGGAACAAAATTTATTGG
Seq C2 exon
CCCTGTCATAGTGGAAATCCCTCACTTTGGGTCCATGAGAGGAAAAGAGAGAGAACTCATTGTTCTTCGAAGTGAAAATGGTGAAACTTGGAAGGAGCATCAGTTTGACAGCAAAAATGAAGATTTAACCGAGTTACTTAATGGCATGGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151150_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.210 A=0.529 C2=0.326
Domain overlap (PFAM):
C1:
PF0079115=ZU5=FE(71.4=100)
A:
PF0079115=ZU5=PD(8.3=20.6),PF0079115=ZU5=PU(52.5=94.1)
C2:
PF0079115=ZU5=PD(26.7=52.8)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGTGGAAGGAGAGGGAT
R:
TGCTGTCAAACTGATGCTCCT
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)