BtaEX0004331 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002293 | ARL5A
Description
Bos taurus ADP-ribosylation factor-like 5A (ARL5A), mRNA. [Source:RefSeq mRNA;Acc:NM_001046245]
Coordinates
chr2:44468905-44487919:+
Coord C1 exon
chr2:44468905-44469205
Coord A exon
chr2:44480807-44480954
Coord C2 exon
chr2:44487768-44487919
Length
148 bp
Sequences
Splice sites
3' ss Seq
TATTTGAACTTTTCCCCCAGTTC
3' ss Score
7.63
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
GAGGTTCGTCGCACACAACGCGGCGGCGATGTCCGCGAGCCAGGCGGGAGCCGCGGCGGCAGCGGCGGGGCCTCAAGCACGGCACGGCGGCCTGGGCTTCGGCCTCCCTCCGGTTCCTAAGAAGCGGGCCGACGGCCAGCGCGGCAGCAGCAGCGGCAGAGACGGAGGCTCCGGCGCGTCTCTCTCCTCCCCTTGAGCCTGAGCCGGGGGAGGCCAGGCGGCCCGGGTGGCTGGAGAGGGGTCCGCTGCCCGAGAATGGGAATTCTCTTCACCAGGATATGGAGACTGTTCAATCACCAGG
Seq A exon
TTCTATGAATGAAGTTGTGCATACATCCCCAACAATAGGAAGTAATGTAGAAGAGATAGTGATTAATAATACACGTTTTCTAATGTGGGATATCGGTGGCCAAGAATCTCTTCGTTCTTCCTGGAACACTTACTATACTAACACGGAG
Seq C2 exon
GACCTAAGGAAAGCTGGATTGCTGATTTTTGCTAACAAACAAGATGTTAAAGGATGCATGACTGTAGCAGAAATCTCCCAGTTTTTGAAACTAACTTCTATTAAAGATCACCAGTGGCACATCCAGGCATGCTGTGCTCTTACTGGCGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002293_MULTIEX1-2/4=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=PU(6.4=68.8)
A:
PF0002516=Arf=FE(28.5=100)
C2:
PF0002516=Arf=FE(29.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTCTCTCCTCCCCTTGAG
R:
CTGGATGTGCCACTGGTGATC
Band lengths:
251-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development