GgaEX7006230 @ galGal4
Exon Skipping
Gene
ENSGALG00000012509 | ARL5A
Description
ADP-ribosylation factor-like 5A [Source:HGNC Symbol;Acc:HGNC:696]
Coordinates
chr7:34813786-34817931:-
Coord C1 exon
chr7:34817871-34817931
Coord A exon
chr7:34815004-34815151
Coord C2 exon
chr7:34813786-34813869
Length
148 bp
Sequences
Splice sites
3' ss Seq
CTGATCTCTTCTCCCTGCAGCTC
3' ss Score
12.43
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
AGCACAAAGTAATCATTGTTGGTCTGGATAATGCAGGAAAAACTACCATTCTTTATCAATT
Seq A exon
CTCAATGAATGAAGTGGTGCATACCTCACCTACGATAGGCAGCAATGTGGAAGAGATCGTGGTTAACAACACACGCTTTCTGATGTGGGATATTGGAGGGCAGGAGTCCCTGCGGTCTTCGTGGAACACCTACTACACCAACACTGAG
Seq C2 exon
TTTGTAATAGTTGTTGTGGACAGCACAGACAGAGAGAGAATTTCGGTGACTAAAGAAGAACTGTATAAGATGTTAGCACATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012509-'6-10,'6-4,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=FE(11.8=100)
A:
PF0002516=Arf=FE(28.8=100)
C2:
PF0002516=Arf=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAAAGTAATCATTGTTGGTCTGG
R:
TCATGTGCTAACATCTTATACAGTTC
Band lengths:
143-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]