DreEX6036158 @ danRer10
Exon Skipping
Gene
ENSDARG00000018627 | arl5a
Description
ADP-ribosylation factor-like 5A [Source:ZFIN;Acc:ZDB-GENE-040718-28]
Coordinates
chr9:23095508-23098135:-
Coord C1 exon
chr9:23098075-23098135
Coord A exon
chr9:23095661-23095808
Coord C2 exon
chr9:23095508-23095591
Length
148 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCTCATATCTCCAGCTC
3' ss Score
9.47
5' ss Seq
GAGGTAGAT
5' ss Score
6.04
Exon sequences
Seq C1 exon
AACACAAGGTCATTATTGTTGGGCTGGACAATGCAGGAAAGACCACCATACTTTATCAGTT
Seq A exon
CTCTATGAATGAGGTGGTCCACACTTCACCCACCATAGGCAGCAATGTGGAAGAGATTGTGGTGAACAATACACACTTCCTCATGTGGGACATTGGAGGACAGGAGTCGCTGCGCTCCTCATGGAACACTTACTACACCAACACAGAG
Seq C2 exon
TTTGTGATCGTGGTGGTGGACAGCACTGACCGAGAGAGGATCTCCGTGACCAGAGAGGAGCTCTACAGGATGTTAGCTCACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018627-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=FE(11.4=100)
A:
PF0002516=Arf=FE(28.0=100)
C2:
PF0002516=Arf=FE(15.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTCATTATTGTTGGGCTGGA
R:
CGTGAGCTAACATCCTGTAGAGC
Band lengths:
138-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]