HsaEX6016016 @ hg38
Exon Skipping
Gene
ENSG00000162980 | ARL5A
Description
ADP ribosylation factor like GTPase 5A [Source:HGNC Symbol;Acc:HGNC:696]
Coordinates
chr2:151812357-151815199:-
Coord C1 exon
chr2:151815139-151815199
Coord A exon
chr2:151814169-151814316
Coord C2 exon
chr2:151812357-151812440
Length
148 bp
Sequences
Splice sites
3' ss Seq
ATATAAACTTTTTTCCCCAGTTC
3' ss Score
7.46
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
AGCACAAAGTTATCATTGTTGGGCTGGATAATGCAGGGAAAACTACCATTCTTTACCAATT
Seq A exon
TTCTATGAATGAAGTTGTACATACATCTCCTACAATAGGAAGTAATGTAGAAGAGATAGTGATTAATAATACACGTTTCCTAATGTGGGATATTGGTGGCCAAGAATCTCTTCGTTCTTCCTGGAACACTTACTATACTAACACAGAG
Seq C2 exon
TTTGTAATAGTTGTTGTGGACAGTACAGACAGAGAGAGGATTTCTGTAACTAGAGAAGAACTCTATAAAATGTTAGCGCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162980-'3-9,'3-8,4-9=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.007 C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=FE(11.6=100)
A:
PF0002516=Arf=PU(33.8=97.9)
C2:
PF0002516=Arf=FE(15.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAAAGTTATCATTGTTGGGCT
R:
CTCATGCGCTAACATTTTATAGAGT
Band lengths:
144-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains