HsaEX6016016 @ hg19
Exon Skipping
Gene
ENSG00000162980 | ARL5A
Description
ADP-ribosylation factor-like 5A [Source:HGNC Symbol;Acc:696]
Coordinates
chr2:152668871-152671711:-
Coord C1 exon
chr2:152671653-152671711
Coord A exon
chr2:152670683-152670830
Coord C2 exon
chr2:152668871-152668954
Length
148 bp
Sequences
Splice sites
3' ss Seq
ATATAAACTTTTTTCCCCAGTTC
3' ss Score
7.46
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
CACAAAGTTATCATTGTTGGGCTGGATAATGCAGGGAAAACTACCATTCTTTACCAATT
Seq A exon
TTCTATGAATGAAGTTGTACATACATCTCCTACAATAGGAAGTAATGTAGAAGAGATAGTGATTAATAATACACGTTTCCTAATGTGGGATATTGGTGGCCAAGAATCTCTTCGTTCTTCCTGGAACACTTACTATACTAACACAGAG
Seq C2 exon
TTTGTAATAGTTGTTGTGGACAGTACAGACAGAGAGAGGATTTCTGTAACTAGAGAAGAACTCTATAAAATGTTAGCGCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162980-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.007 C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=FE(11.6=100)
A:
PF0002516=Arf=PU(33.8=97.9)
C2:
PF0002516=Arf=FE(15.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTATCATTGTTGGGCTGGA
R:
CTCATGCGCTAACATTTTATAGAGT
Band lengths:
138-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)