MmuEX0006142 @ mm10
Exon Skipping
Gene
ENSMUSG00000036093 | Arl5a
Description
ADP-ribosylation factor-like 5A [Source:MGI Symbol;Acc:MGI:1922673]
Coordinates
chr2:52412062-52416696:-
Coord C1 exon
chr2:52416636-52416696
Coord A exon
chr2:52416064-52416211
Coord C2 exon
chr2:52412062-52412145
Length
148 bp
Sequences
Splice sites
3' ss Seq
GTAAACTTTTCCCCTCCTAGTTC
3' ss Score
7.22
5' ss Seq
GAGGTAACA
5' ss Score
8.1
Exon sequences
Seq C1 exon
AGCACAAAGTTATCATTGTTGGGCTGGACAATGCTGGGAAGACGACCATCCTTTACCAGTT
Seq A exon
TTCCATGAATGAAGTCGTACACACATCTCCTACAATAGGAAGCAATGTGGAAGAGATTGTGGTTAATAATACCCGTTTCCTGATGTGGGATATTGGTGGCCAAGAATCACTTCGTCCTTCCTGGAACACGTACTATACTAACACAGAG
Seq C2 exon
TTTGTAATAGTTGTTGTGGACAGCACAGACAGAGAAAGAATTTCGGTAACTAGAGAAGAGCTCTACAAGATGCTAGCCCACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036093-'4-3,'4-1,5-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=FE(11.6=100)
A:
PF0002516=Arf=FE(28.5=100)
C2:
PF0002516=Arf=FE(15.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTATCATTGTTGGGCTGGACA
R:
CTCGTGGGCTAGCATCTTGTA
Band lengths:
138-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types