BtaEX0004467 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001473 | ARVCF
Description
Bos taurus armadillo repeat gene deleted in velocardiofacial syndrome (ARVCF), mRNA. [Source:RefSeq mRNA;Acc:NM_001105380]
Coordinates
chr17:74933557-74935171:-
Coord C1 exon
chr17:74935000-74935171
Coord A exon
chr17:74934504-74934521
Coord C2 exon
chr17:74933557-74933628
Length
18 bp
Sequences
Splice sites
3' ss Seq
GTGCTTCCTCGGCCGCCCAGAAG
3' ss Score
3.71
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TCGGTGGAGAACTGTGTGTGCATTGTCCGGAACCTCTCCTACCACGTGCATAAGGAGGTGCCGGGGGCCGAAAGGTACCAGGAGGCCGAGCCTGGGCCCCCGGGTGGTTCCGGGAGCGCCCAGCGCCGGAGCAGGGAGGACGCCGGCTGCTTCGGTGGCAAGAAGGCCAAAG
Seq A exon
AAGAGTGGTTCCATCAAG
Seq C2 exon
GGAAGCGGGATGGAGAGATGGACCAGAACTCGGACACCCTGGACCTGCCCAAGCGCACTGAGGCTGCCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001473_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.517 A=0.429 C2=0.720
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF136461=HEAT_2=PU(14.7=56.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACCAGGAGGCCGAGC
R:
ATCTCTCCATCCCGCTTCC
Band lengths:
118-136
Functional annotations
There are 1 annotated functions for this event
PMID: 24644279
All four isoforms co-immunoprecipitate with p68. There is an alternative promoter (N-term) and an NLS (HsaEX0006131).
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development