RnoEX0011988 @ rn6
Exon Skipping
Gene
ENSRNOG00000001888 | Arvcf
Description
ARVCF, delta catenin family member [Source:RGD Symbol;Acc:1306655]
Coordinates
chr11:86740715-86742352:-
Coord C1 exon
chr11:86742181-86742352
Coord A exon
chr11:86741625-86741642
Coord C2 exon
chr11:86740715-86740786
Length
18 bp
Sequences
Splice sites
3' ss Seq
TGCTTCTTCCGGCCGCCCAGAGG
3' ss Score
3.49
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TCAGTAGAGAACTGTGTGTGCATCATGCGGAACCTGTCCTACCACGTGCACAAGGAAGTTCCAGGGGCTGACAGGTACCAGGAGGTGGAGCCTGGGATCCCGGGCAGTGCTGCAACCTCCCAGCGTCGGAGGAAGGATGACGCCAGCTGCTTTGGTGGCAAGAAAGCGAAAG
Seq A exon
AGGAGTGGTTCCATCAAG
Seq C2 exon
GGAAGAAGGATGCAGAGGCCGACCGGAACTTTGACACATTGGACCTGCCCAAACGTACTGAAGCTGCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001888-'21-18,'21-17,22-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.445 A=0.286 C2=0.327
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF136461=HEAT_2=PU(13.8=52.0)
Main Inclusion Isoform:
ENSRNOT00000044635fB1508
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGTCGGAGGAAGGATGA
R:
GGGCAGGTCCAATGTGTCAAA
Band lengths:
102-120
Functional annotations
There are 1 annotated functions for this event
PMID: 24644279
All four isoforms co-immunoprecipitate with p68. There is an alternative promoter (N-term) and an NLS (HsaEX0006131).
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]