GgaEX0002482 @ galGal4
Exon Skipping
Gene
ENSGALG00000002040 | ARVCF
Description
armadillo repeat gene deleted in velocardiofacial syndrome [Source:RefSeq peptide;Acc:NP_989796]
Coordinates
chr15:1082785-1088838:-
Coord C1 exon
chr15:1088667-1088838
Coord A exon
chr15:1086623-1086640
Coord C2 exon
chr15:1082785-1082856
Length
18 bp
Sequences
Splice sites
3' ss Seq
GCTGCTTTTCTGGTAATTAGAGG
3' ss Score
2.48
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TCCGTGGAGAATTGTGTGTGCATCATGAGGAACCTTTCCTATCATGTCCACAAAGAGGTCCCCGGAGCTGATAAGTACCAAGAACTTGATGCTGGTCAGACTGCGGGCACGGGAGGCTCTCAGAAAAAGAAGAAAGATGATGCTGGTTGTTTCGGTGGAAAGAAAGCTAAAG
Seq A exon
AGGAGTGGTTCAATCAAG
Seq C2 exon
GAAAGAAGAATGGAGATTTGGACAGGAGTTTTGATACACTTGATTTGCCGAAGCGGTCTGAGACAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002040_MULTIEX4-4/5=2-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.445 A=0.286 C2=0.105
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0051418=Arm=PU(4.9=8.0)
Main Inclusion Isoform:
ENSGALT00000003170fB268
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGTTGTTTCGGTGGAAA
R:
CTTTTGCTGTCTCAGACCGCT
Band lengths:
104-122
Functional annotations
There are 1 annotated functions for this event
PMID: 24644279
All four isoforms co-immunoprecipitate with p68. There is an alternative promoter (N-term) and an NLS (HsaEX0006131).
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]