BtaEX0004787 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014312 | ATL1
Description
Bos taurus atlastin GTPase 1 (ATL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001034631]
Coordinates
chr10:43495561-43527917:+
Coord C1 exon
chr10:43495561-43495745
Coord A exon
chr10:43525542-43525789
Coord C2 exon
chr10:43527783-43527917
Length
248 bp
Sequences
Splice sites
3' ss Seq
ATTCTTATCTTATTCAACAGGTG
3' ss Score
9.8
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
ACTCCTTCCCACCAGCGCCACAGCAACATCCTCAGAGTCTGAGGGAACTGCGCCCAGCGAGGGCATAGAGCCTCCCACCGCCAGCAACCTGCAGCCGGGAGAGGAGCGAAAGCACTGACAGCGCCTCACCGCCACCAGTCCCCGGACCACCATGGCCAAGAACCGCAGGGACAGAAACAGTTGGG
Seq A exon
GTGGGTTTTCAGAAAAGACATATGAATGGAGCTCCGAGGAGGAGGAGCCAGTGAAAAAGGCAGGACCGGTCCAAGTCCTCGTTGTCAAAGATGACCATTCCTTTGAATTAGATGAAACTGCTCTAAATCGGATCCTTCTCTCAGAGGCTGTCAGGGACAAGGAAGTCGTCGCTGTATCTGTGGCTGGAGCATTTAGAAAAGGAAAATCCTTCCTAATGGACTTCATGTTGAGATACATGTATAACCAG
Seq C2 exon
GAATCAGTTGATTGGGTTGGAGATCACAATGAACCATTGACCGGTTTTTCGTGGAGAGGCGGGTCTGAACGAGAGACCACCGGAATCCAGATATGGAGTGAAATCTTCCTTATCAATAAACCTGATGGTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014312_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.024 C2=0.067
Domain overlap (PFAM):
C1:
NO
A:
PF0226314=GBP=PU(18.8=61.4)
C2:
PF0226314=GBP=FE(16.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACAGCAACATCCTCAGAG
R:
CCATCAGGTTTATTGATAAGGAAGAT
Band lengths:
297-545
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development