DreEX0015568 @ danRer10
Exon Skipping
Gene
ENSDARG00000060481 | atl1
Description
atlastin GTPase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8003]
Coordinates
chr13:36638817-36648447:+
Coord C1 exon
chr13:36638817-36639040
Coord A exon
chr13:36645871-36646121
Coord C2 exon
chr13:36648313-36648447
Length
251 bp
Sequences
Splice sites
3' ss Seq
TTTAATGCGGTTGTTTGCAGGGT
3' ss Score
7.3
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
Exon sequences
Seq C1 exon
TATTACATTAGAAATGTTTACCATGCAGCCTCTCACAGCGCCACCAGCGGTCTAAAAGCACGCTGCATGTTCGCTTCAGATGAGAATGAGCCTCCATCACTGGCAGCTGATTTCCAGCATCGCATTCGTCTCATGAACGCTGCTTAAATCCGACCCGACCCCGAATACTGACCAAAACAACCAGCGCGACATGGCACGGGACAAAAAGGACAGAGATAGCTGGG
Seq A exon
GGTCTTTCGTGGATAAGAACGTGTATGACTGGAGCTCTGAGGAGGAGGAGGCCGACGGTCGGGCGCGTCCGGTGCAGGTGCTGGTGGTGAAAGATGACCATACGTTTGAGCTGGACGAGGCAGCGCTCAGTAAGATCCTGCTGTCCGAGGAGGTCCGAGACAGAGAGGTGGTGGCCATTTCTGTGGCAGGAGCCTTCCGGAAGGGCAAATCCTTCCTCATGGACTTCATGCTGCGCTACATGTACAGCCAG
Seq C2 exon
GCCAGTGAAAAGTGGTTGGGGGATGCTGAAGAGCCGCTGACAGGATTCTCATGGAGAGGAGGATCAGAGCGGGAGACCACCGGAATCCAGATCTGGAGTGAAGTCTTCCTGGTGGACAAACCAGACGGTAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060481-'0-2,'0-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
PF0433210=DUF475=PU(74.1=71.4),PF0226314=GBP=PU(53.7=60.7)
C2:
PF0433210=DUF475=PD(24.7=45.5),PF0226314=GBP=FE(45.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACCATGCAGCCTCTCACAG
R:
ATCTGGATTCCGGTGGTCTCC
Band lengths:
299-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]