MmuEX6081326 @ mm9
Exon Skipping
Gene
ENSMUSG00000021066 | Atl1
Description
atlastin GTPase 1 [Source:MGI Symbol;Acc:MGI:1921241]
Coordinates
chr12:71008792-71032659:+
Coord C1 exon
chr12:71008792-71008979
Coord A exon
chr12:71026929-71027176
Coord C2 exon
chr12:71032525-71032659
Length
248 bp
Sequences
Splice sites
3' ss Seq
ATTGGTATTTTGTTCCACAGGTG
3' ss Score
9.9
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
TCCTTCCCACCAGCGCCACAGCAACATCCTCAGAATCTGAGCGAACTGCGCCCAGAACGGGCACAGAGCCTCTTAACTGCCAGAAACCTGCGGGGCCCTGGAGAAGACCGCAAGAGCAGTGACAGCGCCTCGCCACACCAGCCCACAGACCGCCATGGCTAAGAGCCGCAGGGACAGAAACAGTTGGG
Seq A exon
GTGGGTTTTCAGAGAAGTCAAGTGACTGGAGCTCAGAAGAGGAGGAGCCAGTGAGAAAGGCAGGGCCTGTCCAGGTCCTCATCGTCAAGGACGACCATTCCTTTGAGTTAGACGAGGCTGCGCTGAACCGCATCCTTCTGTCCCAGGCCGTCAGAGACAAGGAGGTGGTTGCTGTGTCTGTTGCTGGAGCCTTTAGAAAAGGGAAATCCTTCCTGATGGACTTCATGTTGCGGTACATGTACAACCAG
Seq C2 exon
GAATCTGTTGATTGGGTTGGAGATTACAATGAACCATTGACTGGATTTTCATGGAGGGGTGGATCGGAACGAGAAACCACAGGAATCCAGATATGGAGTGAAGTTTTCCTCATCAATAAGCTTGATGGTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021066-'2-2,'2-1,4-2=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.096 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0226314=GBP=PU(18.8=61.4)
C2:
PF0226314=GBP=FE(16.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACAGCAACATCCTCAGAA
R:
TATTGATGAGGAAAACTTCACTCCA
Band lengths:
292-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: