DmeEX6022994 @ dm6
Exon Skipping
Gene
FBgn0039213 | atl
Description
The gene atlastin is referred to in FlyBase by the symbol Dmelatl (CG6668, FBgn0039213). It is a protein_coding_gene from Dmel. It has 4 annotated transcripts and 4 polypeptides (1 unique). Gene sequence location is 3R:24625671..24634714. Its molecular function is described by: guanyl ribonucleotide binding; identical protein binding; GTP binding; GTPase activity; protein binding. It is involved in the biological process described with 12 unique terms, many of which group under: microtubule polymerization or depolymerization; regulation of protein depolymerization; cell differentiation; Golgi organization; organelle membrane fusion. 26 alleles are reported. The phenotypes of these alleles manifest in: syncytium; cell projection; intracellular membrane-bounded organelle; organelle; lipid droplet. The phenotypic classes of alleles include: visible; stress response defective; phenotype; increased mortality. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderately high expression. Peak expression observed within 00-18 hour embryonic stages, during late larval stages, during early pupal stages, in adult male stages.
Coordinates
chr3R:24630291-24633370:+
Coord C1 exon
chr3R:24630291-24630750
Coord A exon
chr3R:24631783-24632091
Coord C2 exon
chr3R:24632157-24633370
Length
309 bp
Sequences
Splice sites
3' ss Seq
CTGTCTGTTTATGCTTGCAGTTG
3' ss Score
8.4
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TTCCAAACGGCATTGCCAGATGTGATTGTTATTTTGAATTTTAAATTCCCATTCAGCGCGCCAAAGTCTCGGACAACAGTTGGTCTTAATTAAGTGGCAATGTGTTAATTGGACAGACGCGATTTTGCTAACGTTGCAGCTGCCGCCGGACCAATTGCATTACCCACCTCCCTTCCACCACGGTGTCTATTCCTATTTTGCCATGTGGCGACGGCAAATGAGAGTTGATCGGAAAAGAGAGAGTACCGCTTCGCTCTCTTTTTGAGGTAGCCGATTCATTGGTGACTTGCGTGTTGTGCTTGCAGTTTGATTTGGTTGACGGTCGCGCTGGTCGTGTATTTATATTCATATTCCCATTCCGCATCCGAATCGGACTCAATTAGACGCAAGCATAACTTTTATGTGGCCTGTATAATCGGGAGTGTGGCATAATTCCCCACCGATCTCTTGTCTTAATGTG
Seq A exon
TTGACAGGTCGAAATCCAAAAGATTAATAAGAAAGAATTTCCCAACGGAGGCAAAAATAGCCGGTAAAACAGAGACAGCAAACGGAATAGCAGACAAGGATTCCAAACACCATAATGGGCGGATCGGCAGTGCAGGTGATCAACGCCTCCGAGGAGCACACATTTGTGCTCAACGAGGATGCGCTGAGTGAGGTCCTAATGCGGGATGAGGTCAAGGATCGGTTCGTCTGCGTTGTCTCCGTGGCTGGAGCCTTCCGAAAGGGCAAGAGCTTCCTGCTGGACTTTTTTCTGCGCTATATGTATTCAAAG
Seq C2 exon
TATGTGCATCACGATGCGACAGACTGGCTGGGAGGCGAATCAGATCCGCTGGAGGGTTTCTCCTGGCGCGGCGGATCTGAGCGCGACACCACCGGCATTCTCATGTGGTCCGACATATTCCTGCACGACTATCCCAACGGCGACAAGATAGCCATCATTCTGCTGGACACACAGGGCGCCTTCGACAGCCAGAGCACGGTGCGCGATTGTGCCACCGTTTTTGCGTTGAGCACAATGCTGTCCTCGGTGCAGATATACAACCTGTCACAGAACATCCAGGAGGACGACCTGCAGCACCTGCAGCTCTTCACTGAGTATGGTCGCCTCGCGCTGGCCGACACCGGCAAAAAGCCGTTCCAGCGTCTGCAGTTCCTCGTCCGGGACTGGAGCTTTCCCTACGAGGCGGAATATGGTGCACTGGGCGGGGATAAGATTCTGAAACGACGTCTGGAGGTGTCCGACAAACAGCACCCAGAACTACAGTCCCTGCGTCGCCACAT
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0039213-'8-7,'8-5,10-7=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.005
Domain overlap (PFAM):
C1:
NA
A:
PF0226314=GBP=PU(18.5=78.5)
C2:
PF0226314=GBP=PD(80.8=55.1),PF028419=GBP_C=WD(100=31.6)
Main Inclusion Isoform:
FBpp0084036

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0084037, FBpp0311413
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTACCGCTTCGCTCTCTT
R:
CGTGCAGGAATATGTCGGACC
Band lengths:
348-657
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)