GgaEX1009724 @ galGal4
Exon Skipping
Gene
ENSGALG00000008515 | ATL2
Description
atlastin GTPase 2 [Source:HGNC Symbol;Acc:HGNC:24047]
Coordinates
chr3:15787235-15808675:-
Coord C1 exon
chr3:15808575-15808675
Coord A exon
chr3:15792013-15792293
Coord C2 exon
chr3:15787235-15787369
Length
281 bp
Sequences
Splice sites
3' ss Seq
TGTAACCTGTCATTTTGCAGGTA
3' ss Score
11.29
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
CTCTGACGTCACGACGAGTTAATTTTAAACCCGGACAAGATGGCGGAAAGGGACGCGGCGCGGCGCGCGGGGTCGACCCGCCAACGGGCCCGAGCCGGCAG
Seq A exon
GTAAGCATTATGAGGAGGAAGAAGAGGAGGATGCCCTACCTGACTCAGATGTCATGCCAGATTCAGATGACGAGGTGGATTTGGATAAGCCGCGCCCCATACAGATTGTTCTCGCTCATGAAGATGACCATAACTTTGAATTAGATGAAGAAGCATTGGAAAAAATCTTGCTTCAGGAGCACATCAAAGATCTTAACATAGTAGTTGTGTCTGTAGCAGGAGCTTTCCGCAAAGGAAAATCTTTTCTGCTGGACTTCATGCTTAGATACATGTATAACAGG
Seq C2 exon
ACTTCTCCTTGCTGGATAGGTGGAAACACTGAGCCTTTGACTGGGTTTACATGGAGAGGTGGATGTGAACGGGAAACCACTGGCATCCAGATCTGGAGTGAAGTGTTTGTAATTGATAAACCCAATGGAACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008515-'2-3,'2-0,20-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.234 C2=0.044
Domain overlap (PFAM):
C1:
NA
A:
PF0226314=GBP=PU(18.8=54.3)
C2:
PF0226314=GBP=FE(16.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCACGACGAGTTAATTTTAAACCCG
R:
CTTCGTTCCATTGGGTTTATCAA
Band lengths:
228-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]