DreEX0015570 @ danRer10
Exon Skipping
Gene
ENSDARG00000057719 | atl2
Description
atlastin GTPase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6505]
Coordinates
chr13:7962124-7972582:-
Coord C1 exon
chr13:7972399-7972582
Coord A exon
chr13:7964416-7964753
Coord C2 exon
chr13:7962124-7962258
Length
338 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCCTTTCTACTACAGATA
3' ss Score
10.82
5' ss Seq
CAGGTTTCA
5' ss Score
-2.32
Exon sequences
Seq C1 exon
CCTTCCTTTGTGTACAAAACATTTTTGAATGAGTGCATGACGTTGATATGTACAGTATGTGAGAAACTGGGGCTGTGCGACGTCACGCAACAAAGTTTCAAGAGAACCAAGATGGCGGAAGACAGCGGACCGAGGAATCGGCAATTCTCTGCGACGAAACATAAATTAAACAACTTTGATGAAG
Seq A exon
ATATGACTGGTGTGCAGGACGTTCCAATCTGGAGCCCAGCTGAGACGTTGAGTACATTGGAGGAGTTTAGCTCTGATACTAACGGTGTGGCCCCATGTGCTGTAGCTGAAGAGCTCGAGTTAGAGGAGGACCCGGTTCCAGAAGGAGCTCGACCCATCCAAATTGTTATTACTAATGAAAACGATCATAAGTTTGAGTTGGATGCTGCTGCGTTGGAAAAAATCCTGTTGCAGGAACATGTTAAGGATCTCAACGTGGTTGTGGTGTCTGTTGCCGGCGCCTTCCGCAAGGGCAAATCTTTTCTGCTGGACTTCATGCTGCGTTACATGCATGATCAG
Seq C2 exon
TCAGCTGAGTCATGGATAGGAGGAGATGATGAGCCATTGACCGGTTTCTCCTGGAGGGGTGGCTGTGAGAGAGAGACCACGGGAATCCAGGCTTGGAGCGAAGTATTTGTTGTGGAAAAGAAAGATGGAACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057719-'0-2,'0-0,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.440 A=0.150 C2=0.044
Domain overlap (PFAM):
C1:
NO
A:
PF0226314=GBP=PU(18.8=45.1)
C2:
PF0226314=GBP=FE(16.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCCTTTGTGTACAAAACATTTT
R:
CTTAGTTCCATCTTTCTTTTCCACA
Band lengths:
319-657
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]