MmuEX0006699 @ mm10
Exon Skipping
Gene
ENSMUSG00000059811 | Atl2
Description
atlastin GTPase 2 [Source:MGI Symbol;Acc:MGI:1929492]
Coordinates
chr17:79865042-79896123:-
Coord C1 exon
chr17:79895909-79896123
Coord A exon
chr17:79875802-79876046
Coord C2 exon
chr17:79865042-79865176
Length
245 bp
Sequences
Splice sites
3' ss Seq
GTTTCTTTTTTAAATTCTAGGTG
3' ss Score
11
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
Exon sequences
Seq C1 exon
GCTAGGACCCGCAGGCCGCCCCGCCGGCTCCCGGGAGGTTGATAAAGCGGCGGCGGCGTTTGACGTCAGTGGGGAGTTAATTTTAAATCGGTACAAGATGGCGGAGGGGGACGAGGCAGCGCGAAGGCAGCAGCCGCAGCAGGGGCTGAGGCGCCGGCGACAGACCAGCGACTCGAGCGTCGGAGTTAACCACGTCTCGTCTACGACCTCCCTAG
Seq A exon
GTGAGGATTATGAAGATGATGACCTAGTAAACTCAGATGAGGTTATGAAGAAACCATGCCCAGTACAGATTGTTCTCGCCCATGAAGATGACCATAACTTTGAGCTTGATGAAGAGGCTTTGGAGCAGATCCTGCTGCAGGAGCACATACGGGATCTTAACATAGTCGTGGTGTCTGTGGCAGGAGCTTTCCGTAAAGGGAAATCATTTCTCCTGGACTTCATGCTTAGATATATGTATAACAAG
Seq C2 exon
GATTCTCAAAGCTGGATTGGTGGAAACAATGAACCCTTGACTGGCTTTACGTGGCGAGGTGGTTGCGAAAGAGAAACAACAGGCATACAAGTTTGGAATGAAGTGTTTGTGATTGACAGACCTAATGGAACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059811-'0-3,'0-2,8-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.950 A=0.146 C2=0.044
Domain overlap (PFAM):
C1:
NO
A:
PF0226314=GBP=PU(18.8=62.2)
C2:
PF0226314=GBP=FE(16.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGTTGATAAAGCGGCGG
R:
AGGTCTGTCAATCACAAACACTTCA
Band lengths:
305-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types