HsaEX0006685 @ hg19
Exon Skipping
Gene
ENSG00000119787 | ATL2
Description
atlastin GTPase 2 [Source:HGNC Symbol;Acc:24047]
Coordinates
chr2:38546027-38604404:-
Coord C1 exon
chr2:38604285-38604404
Coord A exon
chr2:38570410-38570654
Coord C2 exon
chr2:38546027-38546161
Length
245 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTTTTTAAATTCTAGGTG
3' ss Score
11.92
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
Exon sequences
Seq C1 exon
AGATGGCGGAGGGGGACGAGGCAGCGCGAGGGCAGCAACCGCACCAGGGGCTGTGGCGCCGGCGACGGACCAGCGACCCAAGCGCCGCGGTTAACCACGTCTCGTCCACGACCTCCCTAG
Seq A exon
GTGAGAATTATGAAGATGATGACCTAGTAAATTCTGATGAGGTTATGAAGAAACCATGTCCAGTACAGATTGTTCTTGCTCATGAAGATGACCATAACTTTGAACTTGATGAAGAAGCTTTGGAGCAGATATTGCTACAGGAGCACATACGAGATCTTAACATAGTAGTGGTATCTGTGGCAGGAGCTTTTCGTAAAGGGAAGTCATTTCTACTGGACTTCATGCTTAGATACATGTATAACAAG
Seq C2 exon
GATTCTCAAAGTTGGATTGGTGGAAACAATGAACCATTGACAGGCTTTACATGGCGAGGTGGCTGTGAAAGAGAAACAACAGGCATACAAGTTTGGAATGAAGTATTTGTGATTGACAGACCTAATGGAACTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119787-'0-7,'0-5,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.828 A=0.093 C2=0.043
Domain overlap (PFAM):
C1:
PF117293=Capsid-VNN=PU(56.5=92.1)
A:
PF117293=Capsid-VNN=PD(40.3=30.5),PF0226314=GBP=WD(100=63.4),PF0226314=GBP=PU(2.8=4.9)
C2:
PF0226314=GBP=FE(16.2=100)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGACCAGCGACCCAAG
R:
AGTTCCATTAGGTCTGTCAATCACA
Band lengths:
189-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)