RnoEX0012780 @ rn6
Exon Skipping
Gene
ENSRNOG00000006523 | Atl2
Description
atlastin GTPase 2 [Source:RGD Symbol;Acc:1305125]
Coordinates
chr6:2569013-2593808:+
Coord C1 exon
chr6:2569013-2569132
Coord A exon
chr6:2584505-2584749
Coord C2 exon
chr6:2593674-2593808
Length
245 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTCTTTAAATTCCAGGTG
3' ss Score
11.43
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
Exon sequences
Seq C1 exon
AGATGGCGGAGGGGGACGAGGCAGCGCGAAGGCAGCAGCCGCAGCAGGGGCTGAGGCGCCGGCGACAGACTAGCGACTCGAGCGTCGGGGTTAACCACGTCTCGTCCACGACCTCCTTAG
Seq A exon
GTGAGGATTATGAAGATGCTGACCTAGTGAACTCAGATGAGGTCATGAGGAAACCGTGCCCAGTACAGATTGTCCTTGCCCATGAAGACGACCATAACTTTGAGCTTGACGAAGAGGCTTTGGAGCGGATACTGCTGCAGGAGCACATCCGGGACCTTAACATAGTCGTGGTATCTGTGGCAGGAGCTTTTCGTAAAGGGAAATCATTTCTCCTGGACTTCATGCTTAGATATATGTATAACAAG
Seq C2 exon
GATTCGCAAAGCTGGATTGGTGGAAGCAATGAGCCGTTGACTGGCTTTACATGGCGAGGTGGTTGTGAAAGAGAAACAACAGGCATACAAGTTTGGAATGAAGTGTTTGTGATCGACAGACCTAATGGAACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006523_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.912 A=0.085 C2=0.020
Domain overlap (PFAM):
C1:
NO
A:
PF0226314=GBP=PU(18.8=62.2)
C2:
PF0226314=GBP=FE(16.2=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCGACAGACTAGCGACTC
R:
TTTTGTTCCATTAGGTCTGTCGA
Band lengths:
196-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]