BtaEX0004788 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016167 | ATL2
Description
atlastin GTPase 2 [Source:HGNC Symbol;Acc:HGNC:24047]
Coordinates
chr11:20707113-20758963:-
Coord C1 exon
chr11:20758845-20758963
Coord A exon
chr11:20729405-20729649
Coord C2 exon
chr11:20707113-20707247
Length
245 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTTTTTAACTCTAGGTG
3' ss Score
12.22
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
Exon sequences
Seq C1 exon
GATGGCGGAGGGGGACGAGGTAACGCGAAGCCAAGAACCGCACCAAGGGCTGCGGCGCCGGCGGCGGACCAGCGACTCAAACACCGGGGTTAACCACGTCTCGTCCACGACCCTCCTAG
Seq A exon
GTGAGAATTATGAAGATGATGACCTAGTAAACTCTGATGAGGTTATGAAGAAACCATGTCCAGTACAGATTGTCCTTGCACATGAAGATGACCATAACTTTGAGCTTGATGAAGAAGCTTTGGAGCAGATATTACTACAGGAACACATACGAGACCTAAACATAGTAGTGGTGTCTGTGGCAGGAGCTTTCCGTAAAGGGAAATCATTTCTGCTGGACTTCATGCTTAGATATATGTATAACAAG
Seq C2 exon
GATTCTCAGAGTTGGATTGGTGGAAACAATGAACCATTGACTGGCTTTACATGGCGAGGTGGTTGCGAAAGAGAAACAACAGGCATACAAGTCTGGAATGAAGTGTTTGTGATCGAGAGACCTAATGGAACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016167-'0-3,'0-0,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.925 A=0.037 C2=0.044
Domain overlap (PFAM):
C1:
NO
A:
PF0226314=GBP=PU(18.8=62.2)
C2:
PF0226314=GBP=FE(16.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGGGGACGAGGTAACG
R:
GTTCCATTAGGTCTCTCGATCACA
Band lengths:
244-489
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development