HsaEX0006699 @ hg19
Exon Skipping
Gene
ENSG00000184743 | ATL3
Description
atlastin GTPase 3 [Source:HGNC Symbol;Acc:24526]
Coordinates
chr11:63426233-63439084:-
Coord C1 exon
chr11:63438762-63439084
Coord A exon
chr11:63426510-63426724
Coord C2 exon
chr11:63426233-63426376
Length
215 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTGCATGAACATAGATG
3' ss Score
4.66
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ACACGCGGCAGGCGGTGGCGGGATTCTGCCGCGTGCGCTTTCCCGCCCCGCCTCGCCTAGCCTCGTCCTGCGCTCGCCACGCCTCGGGCTGTCCGTTGGGCCACGCAGACCGCGCTGCGCTCGCTCCGTCGCGGCTCCGCGTGCCCCACCTTCTGGCTAGTTTTTTCTAGAGCCCAGGCTCCGCCCGTTTCCCGCTTCCAGGGCCCGGTTCGTTCCCGCCCGCACCCGTCCCTCTCCTCTGCACCCCTGCTGCTTCTGCTTTGAAGGCGGAGGCTCCATGTTGTCCCCTCAGCGAGTGGCAGCAGCTGCCTCAAGAGGAGCAG
Seq A exon
ATGATGCCATGGAGAGCAGCAAGCCTGGTCCAGTGCAGGTTGTTTTGGTTCAGAAAGATCAACATTCCTTTGAGCTAGATGAGAAAGCCTTGGCCAGCATCCTCTTGCAGGACCACATCCGAGATCTTGATGTGGTGGTGGTTTCAGTGGCTGGTGCCTTCCGAAAGGGCAAGTCCTTCATTCTGGATTTTATGCTACGATACTTATATTCTCAG
Seq C2 exon
AAGGAAAGTGGCCATTCAAATTGGTTGGGTGACCCAGAAGAACCGTTAACAGGATTTTCCTGGAGAGGGGGATCTGATCCAGAAACCACTGGGATTCAAATCTGGAGTGAAGTTTTCACTGTGGAGAAGCCAGGTGGGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184743_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.345 A=0.067 C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
PF0226314=GBP=PU(18.5=70.8)
C2:
PF0226314=GBP=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGCCTAGCCTCGTCCTG
R:
CCCAACCAATTTGAATGGCCAC
Band lengths:
301-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)