MmuEX0006705 @ mm10
Exon Skipping
Gene
ENSMUSG00000024759 | Atl3
Description
atlastin GTPase 3 [Source:MGI Symbol;Acc:MGI:1924270]
Coordinates
chr19:7494438-7510126:+
Coord C1 exon
chr19:7494438-7494661
Coord A exon
chr19:7509348-7509562
Coord C2 exon
chr19:7509983-7510126
Length
215 bp
Sequences
Splice sites
3' ss Seq
TGTTTCCTAAATGGGCATAGGTG
3' ss Score
4.56
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CCTCGTCACGCCCTGCGCCATCGGCAGGGCTGTCTCCTGAGCTGTAGGCTTTCTCCGCGCGCCCCTCCTTCTCGGTTTCTCCCCAAGTCCAGGCTCCGCCTGTTTCCCTCCTCCAGGGCAGCCTCAACCCGCTCCTGTCTTCTCTGCCTCTGCTACTTCTGCTGAAGGAGGAGGCTCCATGTTGTCCCCTCAGCGAACTGCAGCGGTGGCATCGAGAGGAGCAG
Seq A exon
GTGATGCCATGGAAAATGGAAAACCTGGTCCAGTGCAGGTTGTTTTGGTTCATAAAGAACAACATTCCTTTGAGCTAGAAGAGAGAGCCTTGGCCAGCGTCCTCCTCCAAGACCATATCCGAGATCTTGATGTGGTGGTAGTATCAGTGGCTGGTGCTTTTCGAAAGGGTAAATCCTTCATTCTGGACTTTATGCTGCGATACTTATATTCTCAG
Seq C2 exon
AAGGAAGGTGGTCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGACAGGATTTTCATGGCGAGGAGGCTCTGATCCAGAAACTACTGGGATTCAGATTTGGAGTGAAGTTTTCACTGTGAAGAAGCCATGTGGAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024759-'2-4,'2-3,7-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.497 A=0.128 C2=0.175
Domain overlap (PFAM):
C1:
NO
A:
PF0226314=GBP=PU(18.5=70.8)
C2:
PF0226314=GBP=FE(17.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTTCTCGGTTTCTCCCCA
R:
CCACATGGCTTCTTCACAGTGA
Band lengths:
297-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types