RnoEX0012788 @ rn6
Exon Skipping
Gene
ENSRNOG00000021203 | Atl3
Description
atlastin GTPase 3 [Source:RGD Symbol;Acc:1309871]
Coordinates
chr1:222746515-222764252:+
Coord C1 exon
chr1:222746515-222746615
Coord A exon
chr1:222763689-222763903
Coord C2 exon
chr1:222764109-222764252
Length
215 bp
Sequences
Splice sites
3' ss Seq
TGGTCTATAAATGAGCATAGGTG
3' ss Score
-1.73
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
TCAGCCCGCTCCTGTCTTCTGTGCCTCTGCTACTTCTGCTGAAGGAGGAGGCTCCATGTTGTCCCCTCAGCGAACTGCAGCGGTGGCATCGAGAGGAGCAG
Seq A exon
GTGATGCCATGGAGAATGGAAAACCTGGTCCAGTGCAGGTCGTTTTGGTTCATAAAGAGCAGCACTCCTTTGAGCTAGAAGAGAGAGCCTTGGCCAGCGTCCTCCTCCAAGACCATATCCGAGATCTTGATGTAGTGGTAGTATCAGTGGCTGGTGCTTTTCGAAAGGGCAAATCCTTCATTCTGGACTTTATGCTGCGATACTTATATTCTCAG
Seq C2 exon
AAGGAACATGGTCATTCAAATTGGTTGGGTGACCCAGAAGAACCACTGACAGGATTTTCATGGCGCGGAGGCTCTGACCCAGAAACTACTGGGATTCAGATTTGGAGTGAAGTTTTCACTGTGAAGAAGCCATGTGGGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021203-'2-4,'2-3,6-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.083 C2=0.167
Domain overlap (PFAM):
C1:
NA
A:
PF0226314=GBP=PU(18.5=70.8)
C2:
PF0226314=GBP=FE(17.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCCCGCTCCTGTCTTC
R:
TCTTTCCCACATGGCTTCTTCAC
Band lengths:
244-459
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]