DreEX6058273 @ danRer10
Exon Skipping
Gene
ENSDARG00000004270 | atl3
Description
atlastin 3 [Source:ZFIN;Acc:ZDB-GENE-041010-109]
Coordinates
chr14:30434580-30436484:+
Coord C1 exon
chr14:30434580-30434685
Coord A exon
chr14:30435983-30436210
Coord C2 exon
chr14:30436350-30436484
Length
228 bp
Sequences
Splice sites
3' ss Seq
ATTTTTATTGTCGCCCACAGTAA
3' ss Score
8.42
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
GCGGTGGGACGGTCTTTGACGGATAAAGTTGTGTTTATTAAAACTGAAACGTTCATAATCTGAAACAGGACCCGTGGAAGTTTTGGAGTGTCAAGCGAAGGATAAG
Seq A exon
TAAGCGTGTGACATCGGACAGAGGATGAGGAGTGAACCTGGGCCAGTTCAGATTGTGACAGTCAACAAGGAGAAGCACTCCTTTGACCTGGACACAGAAGCGCTCAGTCGGATTCTCTTGGTGCCTGAAGTTCGAGATAAGCATGTGGTGGTGGTGTCTGTCGCTGGTGCTTTCCGAAAGGGAAAAAGCTTCCTTTTGGACTTCTTGCTCCGATACATGTATAGGAAG
Seq C2 exon
CCTGGTCAGGACTGGCTTGGGCAGGACAATGATCCGCTGACCGGTTTCTCCTGGAGAGGAGGATCAGAACCAGAGACCACTGGCATCCAGCTATGGAGTGAAGTTTTTGTTGTGCGAAAGAAGGATGGAAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004270-'1-4,'1-3,6-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.029 C2=0.111
Domain overlap (PFAM):
C1:
NA
A:
PF0226314=GBP=PU(18.8=75.0)
C2:
PF0226314=GBP=PD(45.4=95.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACGGTCTTTGACGGATA
R:
TCACTTCCATCCTTCTTTCGCA
Band lengths:
236-464
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]