BtaEX0004793 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003330 | ATL3
Description
Bos taurus atlastin GTPase 3 (ATL3), mRNA. [Source:RefSeq mRNA;Acc:NM_001098978]
Coordinates
chr29:42636374-42658661:-
Coord C1 exon
chr29:42658413-42658661
Coord A exon
chr29:42645658-42645872
Coord C2 exon
chr29:42636374-42636478
Length
215 bp
Sequences
Splice sites
3' ss Seq
TAATCTCTATAACAACATAGGTG
3' ss Score
2.97
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AGTCGGCTAGGCGCTCGCTGCGCCTCGGTCGACCTATGCCAACCCTCTGTGTTCTCGCTCTCTCGCGGCTTCGCGCGCCCCTCCTCGCTAGTTTCTGTTAGAGCCCAGGCCACGCCCGTTTCCCGCCTCCAGGGCCTGGTTCGTTCCCGCCCCAGCCCTGCCCTTTTTGCGCCCCTGCTGCTTCTGCTGGAGGCGGAGGCTCCATGTTGTCCCCTCAGCGAGCGGTAGCGGCTGCATCGGGAGGAGCAG
Seq A exon
GTGATGCTATGGAGAGTGGAAAGCCTGGTCCAGTGCAGGTTGTTTTGGTTCAGAAAGACCAACATTCCTTTGAGCTAGAAGAGAAAGCCTTGGCCAGCATCCTCTTACAGGACCACATCCGAGAGCTCGATGTGGTGGTGGTGTCGGTGGCTGGTGCCTTCCGAAAGGGCAAGTCCTTCTTTCTGGACTTCATGCTACGCTACTTATATTTCCAG
Seq C2 exon
GTTGCAGTTGTTCTGATGGACACCCAGGGGGCATTTGACAGCCAGTCCACAGTGAAAGACTGTGCAACCATCTTCGCTCTGAGCACCATGACTAGCTCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003330_MULTIEX1-1/6=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.069 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0226314=GBP=PU(18.5=70.8)
C2:
PF0226314=GBP=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCCTCTGTGTTCTCGCTC
R:
TCAGAGCGAAGATGGTTGCAC
Band lengths:
292-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development