MmuEX6081326 @ mm10
Exon Skipping
Gene
ENSMUSG00000021066 | Atl1
Description
atlastin GTPase 1 [Source:MGI Symbol;Acc:MGI:1921241]
Coordinates
chr12:69907805-69931672:+
Coord C1 exon
chr12:69907805-69907992
Coord A exon
chr12:69925942-69926189
Coord C2 exon
chr12:69931538-69931672
Length
248 bp
Sequences
Splice sites
3' ss Seq
ATTGGTATTTTGTTCCACAGGTG
3' ss Score
9.9
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
TCCTTCCCACCAGCGCCACAGCAACATCCTCAGAATCTGAGCGAACTGCGCCCAGAACGGGCACAGAGCCTCTTAACTGCCAGAAACCTGCGGGGCCCTGGAGAAGACCGCAAGAGCAGTGACAGCGCCTCGCCACACCAGCCCACAGACCGCCATGGCTAAGAGCCGCAGGGACAGAAACAGTTGGG
Seq A exon
GTGGGTTTTCAGAGAAGTCAAGTGACTGGAGCTCAGAAGAGGAGGAGCCAGTGAGAAAGGCAGGGCCTGTCCAGGTCCTCATCGTCAAGGACGACCATTCCTTTGAGTTAGACGAGGCTGCGCTGAACCGCATCCTTCTGTCCCAGGCCGTCAGAGACAAGGAGGTGGTTGCTGTGTCTGTTGCTGGAGCCTTTAGAAAAGGGAAATCCTTCCTGATGGACTTCATGTTGCGGTACATGTACAACCAG
Seq C2 exon
GAATCTGTTGATTGGGTTGGAGATTACAATGAACCATTGACTGGATTTTCATGGAGGGGTGGATCGGAACGAGAAACCACAGGAATCCAGATATGGAGTGAAGTTTTCCTCATCAATAAGCTTGATGGTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021066-'6-3,'6-2,15-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.096 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0226314=GBP=PU(18.8=61.4)
C2:
PF0226314=GBP=FE(16.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACAGCAACATCCTCAGAA
R:
TATTGATGAGGAAAACTTCACTCCA
Band lengths:
292-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types