RnoEX6028851 @ rn6
Exon Skipping
Gene
ENSRNOG00000005063 | Atl1
Description
atlastin GTPase 1 [Source:RGD Symbol;Acc:1359232]
Coordinates
chr6:92251168-92331831:+
Coord C1 exon
chr6:92251168-92251355
Coord A exon
chr6:92321167-92321414
Coord C2 exon
chr6:92331697-92331831
Length
248 bp
Sequences
Splice sites
3' ss Seq
ATTGATACTTTGTTCAACAGGTG
3' ss Score
7.73
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
TCCTTCCCACCAGCGCCACAGCAACATCCTCAGAATCTGAGCGAACTGCGCCCAGAACGGGCACAGAGCCTCTTAACTGCCAGAAACCTGCGGGGCCCTGGAGGAGACCGCAAGAGCAGTGACAGCGCCTCGCCACACCAGTCCACAGACCGCCATGGCTAAGAGCCGCAGGGACAGAAACAGTTGGG
Seq A exon
GTGGGTTTTCAGAGAAGTCAAGTGATTGGAGCTCAGAAGAGGAGGAGCCGGTGAGAAAGGCAGGACCCGTCCAAGTCCTCATCGTCAAAGACGACCATTCCTTTGAGTTAGATGAGGCTGCACTGAACCGGATCCTTCTGTCTGAGGCCGTCAGAGACAAGGAAGTGGTTGCCGTGTCTGTTGCTGGAGCCTTTAGAAAAGGAAAATCCTTCCTGATGGACTTCATGTTACGGTACATGTACAACCAG
Seq C2 exon
GAATCTGTTGATTGGGTTGGAGATTACAATGAACCATTGACTGGATTTTCATGGAGAGGTGGATCTGAACGAGAAACCACAGGAATCCAGATCTGGAGCGAAGTTTTCCTCATCAATAAGCTTGATGGTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005063-'3-6,'3-5,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.096 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0226314=GBP=PU(18.8=61.4)
C2:
PF0226314=GBP=FE(16.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACAGCAACATCCTCAGAA
R:
TATTGATGAGGAAAACTTCGCTCCA
Band lengths:
292-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]