BtaEX0004971 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019218 | ATP6V0A1
Description
Bos taurus ATPase, H+ transporting, lysosomal V0 subunit a1 (ATP6V0A1), mRNA. [Source:RefSeq mRNA;Acc:NM_174754]
Coordinates
chr19:43211776-43214214:+
Coord C1 exon
chr19:43211776-43211854
Coord A exon
chr19:43213007-43213104
Coord C2 exon
chr19:43214086-43214214
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTTTGATTCTGTCGTTCTAGGAT
3' ss Score
10.03
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
TTAAATCCAGATGTGAACGTTTTCCAGAGGAAATTTGTGAATGAAGTTAGAAGATGTGAAGAAATGGACCGAAAGCTTC
Seq A exon
GATTTGTTGAGAAAGAGATAAGGAAAGCTAACATCCCAATTATGGACACTGGTGAAAACCCAGAGGTGCCCTTCCCCCGGGACATGATTGACTTAGAG
Seq C2 exon
GCTAATTTTGAGAAGATTGAAAATGAACTGAAGGAAATCAACACAAACCAGGAAGCTCTGAAGAGAAATTTCCTAGAACTAACTGAATTAAAATTTATACTTCGCAAAACTCAACAGTTTTTTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019218_MULTIEX1-3/3=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.182 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(13.8=100)
A:
PF0149614=V_ATPase_I=FE(17.0=100)
C2:
PF0149614=V_ATPase_I=FE(22.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGAGGAAATTTGTGAATGAAGT
R:
AACTGTTGAGTTTTGCGAAGTAT
Band lengths:
176-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development