HsaEX0006963 @ hg19
Exon Skipping
Gene
ENSG00000033627 | ATP6V0A1
Description
ATPase, H+ transporting, lysosomal V0 subunit a1 [Source:HGNC Symbol;Acc:865]
Coordinates
chr17:40618447-40622236:+
Coord C1 exon
chr17:40618447-40618546
Coord A exon
chr17:40620028-40620125
Coord C2 exon
chr17:40622108-40622236
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTTTGATTCTGTCATTTTAGGAT
3' ss Score
9.5
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
TTAAATCCAGATGTGAATGTTTTCCAACGGAAATTTGTGAATGAAGTTAGAAGATGTGAAGAAATGGATCGAAAGCTTCGTATGTGCACTTTGGTCTTGT
Seq A exon
GATTTGTTGAGAAAGAGATAAGAAAAGCTAACATTCCGATTATGGACACCGGTGAAAACCCAGAGGTTCCCTTCCCCCGGGACATGATTGACTTAGAG
Seq C2 exon
GCCAATTTTGAGAAGATTGAAAATGAACTGAAGGAAATCAACACAAACCAGGAAGCTCTGAAGAGAAACTTCCTGGAACTGACCGAATTAAAATTTATACTTCGCAAAACTCAGCAATTTTTTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033627_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.187 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(31.7=100)
A:
PF0149614=V_ATPase_I=FE(39.0=100),PF0149614=V_ATPase_I=PU(0.1=0.0)
C2:
PF0149614=V_ATPase_I=PD(29.5=93.9)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGATGTGAATGTTTTCCAACGG
R:
TCGGTCAGTTCCAGGAAGTTT
Band lengths:
180-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)