RnoEX6049734 @ rn6
Exon Skipping
Gene
ENSRNOG00000036814 | Atp6v0a1
Description
ATPase H+ transporting V0 subunit a1 [Source:RGD Symbol;Acc:68405]
Coordinates
chr10:88921815-88924867:+
Coord C1 exon
chr10:88921815-88921893
Coord A exon
chr10:88923954-88924051
Coord C2 exon
chr10:88924739-88924867
Length
98 bp
Sequences
Splice sites
3' ss Seq
GCTCTGCCTCTATCTTCCAGGGT
3' ss Score
10.08
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
TTAAATCCAGATGTGAATGTTTTCCAGAGGAAATTTGTGAATGAAGTTAGAAGATGTGAAGAAATGGATCGAAAACTCC
Seq A exon
GGTTTGTTGAGAAAGAGATAAGAAAAGCTAACATCCCAATTATGGACACTGGAGAGAACCCGGAGGTGCCCTTTCCCAGGGACATGATCGACTTGGAG
Seq C2 exon
GCCAATTTCGAGAAGATCGAAAACGAACTGAAGGAAATCAACACTAACCAGGAAGCTCTAAAGCGAAACTTCCTGGAACTGACTGAATTAAAATTTATACTGCGCAAAACTCAGCAGTTTTTCGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036814-'9-11,'9-8,13-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.167 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(34.7=100)
A:
PF0149614=V_ATPase_I=FE(10.1=100)
C2:
PF0149614=V_ATPase_I=FE(13.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGAGGAAATTTGTGAATGAAGT
R:
ACTGCTGAGTTTTGCGCAGTA
Band lengths:
175-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]