MmuEX6089806 @ mm9
Exon Skipping
Gene
ENSMUSG00000019302 | Atp6v0a1
Description
ATPase, H+ transporting, lysosomal V0 subunit A1 [Source:MGI Symbol;Acc:MGI:103286]
Coordinates
chr11:100879878-100882496:+
Coord C1 exon
chr11:100879878-100879956
Coord A exon
chr11:100881787-100881884
Coord C2 exon
chr11:100882368-100882496
Length
98 bp
Sequences
Splice sites
3' ss Seq
CTATCGTTTTTTTTTTTTAGGAT
3' ss Score
12.08
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
TTAAATCCAGATGTGAATGTTTTCCAGAGGAAATTTGTGAATGAAGTTAGAAGATGTGAAGAAATGGATCGAAAACTCC
Seq A exon
GATTTGTTGAGAAAGAGATAAGGAAAGCTAACATCCCAATTATGGACACCGGTGAAAACCCAGAGGTGCCCTTCCCTCGGGACATGATCGACTTAGAG
Seq C2 exon
GCCAATTTCGAGAAGATTGAAAATGAACTGAAGGAAATCAACACTAACCAGGAAGCTCTGAAGAGAAACTTCCTGGAACTGACTGAATTAAAATTTATCCTGCGAAAAACCCAGCAGTTTTTCGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019302-'3-5,'3-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.202 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(48.1=100)
A:
PF0149614=V_ATPase_I=FE(4.0=100)
C2:
PF0149614=V_ATPase_I=FE(5.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGAGGAAATTTGTGAATGAAGT
R:
AAAACTGCTGGGTTTTTCGCA
Band lengths:
178-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: