DreEX6093995 @ danRer10
Exon Skipping
Gene
ENSDARG00000015174 | atp6v0a1b
Description
ATPase, H+ transporting, lysosomal V0 subunit a1b [Source:ZFIN;Acc:ZDB-GENE-050522-215]
Coordinates
chr24:7598394-7600338:-
Coord C1 exon
chr24:7600260-7600338
Coord A exon
chr24:7598909-7599006
Coord C2 exon
chr24:7598394-7598522
Length
98 bp
Sequences
Splice sites
3' ss Seq
GCTGTTGTCATGTTTTGCAGGGT
3' ss Score
8.65
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
CTCAACCCTGATGTGAACGTGTTTCAGAGGAAGTTTGTGAATGAAGTTAGACGTTGTGAAGAGATGGACAGAAAGCTCA
Seq A exon
GGTTTGTAGAGAAGGAGATTAAGAAAGCCAACATTCCTACTATGGACACTGGCGAGAATCCTGAAGTCCCGTTCCCTCGAGACATGATTGACCTTGAG
Seq C2 exon
GCAACCTTTGAGAAGCTGGAGAATGAGCTGAAGGAGATCAACACTAATCAAGAGGCCCTGAAGAAGAACTTTCTAGAGCTGACAGAACTCAAGCATATCCTCAGACGTACTCAGCAGTTCTTTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015174-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.455 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(3.2=100)
A:
PF0149614=V_ATPase_I=FE(4.0=100)
C2:
PF0149614=V_ATPase_I=FE(11.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACCCTGATGTGAACGTGT
R:
TGCTTGAGTTCTGTCAGCTCT
Band lengths:
173-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]