GgaEX1010032 @ galGal4
Exon Skipping
Gene
ENSGALG00000003256 | ATP6V0A1
Description
V-type proton ATPase 116 kDa subunit a isoform 1 [Source:RefSeq peptide;Acc:NP_990055]
Coordinates
chr27:4930269-4931426:+
Coord C1 exon
chr27:4930269-4930347
Coord A exon
chr27:4930657-4930754
Coord C2 exon
chr27:4931298-4931426
Length
98 bp
Sequences
Splice sites
3' ss Seq
TAATGGTACTGTCTTTCCAGGAT
3' ss Score
6.98
5' ss Seq
GAGGTAATA
5' ss Score
7.96
Exon sequences
Seq C1 exon
CTGAACCCGGACGTGAATGTCTTCCAGCGTAAATTTGTTAATGAAGTCAGGAGGTGTGAAGAAATGGACCGAAAGCTCA
Seq A exon
GATTTGTTGAAAAGGAGATCAAAAAAGCAAATATTCCTATCATGGACACGGGTGAAAACCCAGAGGTGCCATTTCCACGTGACATGATTGATTTGGAG
Seq C2 exon
GCCAACTTTGAGAAAATTGAAAATGAGCTTAAAGAAATCAACACAAATCAAGAAGCTCTGAAAAGAAACTTCTTGGAGCTGACAGAGTTAAAATTTATACTGCGTAAAACTCAGCAATTTTTTGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003256_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.170 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(20.3=100)
A:
PF0149614=V_ATPase_I=FE(25.0=100)
C2:
PF0149614=V_ATPase_I=FE(32.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAACCCGGACGTGAATGTC
R:
ACTCTGTCAGCTCCAAGAAGT
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]