BtaEX0005369 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015789 | BCAN
Description
brevican [Source:HGNC Symbol;Acc:HGNC:23059]
Coordinates
chr3:14231933-14235634:-
Coord C1 exon
chr3:14235507-14235634
Coord A exon
chr3:14234214-14234507
Coord C2 exon
chr3:14231933-14232166
Length
294 bp
Sequences
Splice sites
3' ss Seq
AGCCTCTTTTTCCTCCCCAGGAG
3' ss Score
10.1
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GTATCCCATCCAGACGCCACGAGAGGCCTGTTATGGAGACATGGATGGCTTCCCTGGGGTCCGGAACTACGGAGTGGTCGACCCCGATGACCTCTATGATGTTTACTGTTATGCTGAAGAACTAAATG
Seq A exon
GAGAGCTGTTCCTGGGTGCCCCTCCAGACAAGCTGACCTTGGAGGAGGCGCGGACATACTGCCAGGAGCGGGGTGCTAAGATTGCAACCACCGGCCAGCTGTATGCAGCCTGGGATGGTGGCCTGGACCGCTGCAGCCCTGGCTGGCTGGCTGATGGCAGTGTGCGCTACCCCATCGTCACCCCCAGCCAGCGCTGTGGTGGGGGCCTCCCTGGTGTCAAGACTCTCTTCCTCTTCCCCAACCAGACTGGCTTCCCCAACAAGCACAGCCGCTTCAACGTCTACTGCTTCCGAG
Seq C2 exon
ACTCTGCCCAGCCTTCTGCCATCCCTGAGGCAGCCAACCCAGCCTCTGACCTGGCCTCTGATGCACTGGAAGCCATTGTCACAGTGACTGAGACCCTGGAGGAACTGAAGCTGCCCCAGGAAGCTGTGGAAAGCGAGTCCCGAGGAGCCATCTACTCCATCCCCATTATAGAGGATGGAGGTGGTGGGAGCTCCACTCCAGAAGACCCAGCAGAGGCCCCTAGAACCCTCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015789-'7-14,'7-11,8-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.696
Domain overlap (PFAM):
C1:
PF0019312=Xlink=PD(38.5=84.1),PF0019312=Xlink=PU(0.1=0.0)
A:
PF0019312=Xlink=WD(100=98.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACATGGATGGCTTCCCTGG
R:
CTCTGCTGGGTCTTCTGGAGT
Band lengths:
307-601
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development