DreEX6041369 @ danRer10
Exon Skipping
Gene
ENSDARG00000099412 | bcan
Description
brevican [Source:ZFIN;Acc:ZDB-GENE-030131-6045]
Coordinates
chr16:29388185-29390696:-
Coord C1 exon
chr16:29390569-29390696
Coord A exon
chr16:29390102-29390395
Coord C2 exon
chr16:29388185-29389315
Length
294 bp
Sequences
Splice sites
3' ss Seq
ATTGATGTGACTGTTTTTAGGGG
3' ss Score
6.17
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
ATACCCGATCCAGATGCCTCGGGAAGGGTGTTTTGGAGATATGGATGGATTACCAGGCGTTCGTAACTACGGCACGATGGAGAACGATGAACTCTATGACGTATATTGCTATGTGGAGAACATTCATG
Seq A exon
GGGAGGTTTTTCATGGCTCAACCCCGCAGCGCTTCAGCTTGTCAGAGGCAAAGGCGTACTGTGAGCAGCAGGACGCTCAGCTCGCTACCACAGGTCAGCTGTACGCTGCCTGGAATGATGGTCTGAACCACTGCAGTCCTGGCTGGCTCGCTGACGGAAGCGTTCGCTACCCCATCGTGACCCCCCGTGAACGCTGTGGGGGCTCTGAACCTGGCGTCAAGACCGTCTATCGGTTTAGCAATCAAACAGGATTCCCTGAACCAAACACTCGCCATGATGCTTACTGCTTCAAAG
Seq C2 exon
CTAACAGCAACTCTCAAACAGCCCCACCTGCAGATTATATGGCAACATCGCCAGAGGAAACAGAGCAGCATATCGTAACTTTAGCAGAACCCCAAGAGGAATACAGTGTGCATCAGGTCACTCAGCGATCTGAAAATGAAGCTCAGGGAGCTGTTGAGTCCTTTTCAATTTACAGCACTCAAACTGCTTCAGAAACTGAGGAACACAACCATACCTCAAGCCCTCAAGAAGACATCATTATTGGCTCCAGAAAAGACCTCACTACTCCAACCAGCACAGAGGGAAATACTGAGACCATTGAGGTCACCTGGCAAAATGTTGAGTCCATTCCTGAAATTTACATAGATCCAAAACGCAATAATTTCATGCTAGAGGGAGAACCTGAAATAAAAGCTTCAGCTGTCGATGGTGTGAAAAGCAGCAATCATAGACACTACCAACCAATGCCAGATACTAATCTAGAGCCAGGGGAGCCTATCGACTTCATCCCACCTACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099412-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.293 C2=0.989
Domain overlap (PFAM):
C1:
PF0019312=Xlink=PD(38.5=84.1),PF0019312=Xlink=PU(0.1=0.0)
A:
PF0019312=Xlink=WD(100=98.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACGATGGAGAACGATGAA
R:
TGTCTTCTTGAGGGCTTGAGGT
Band lengths:
292-586
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]