RnoEX6010159 @ rn6
Exon Skipping
Gene
ENSRNOG00000018798 | Bcan
Description
brevican [Source:RGD Symbol;Acc:2194]
Coordinates
chr2:187366286-187368586:-
Coord C1 exon
chr2:187368459-187368586
Coord A exon
chr2:187367702-187367995
Coord C2 exon
chr2:187366286-187366507
Length
294 bp
Sequences
Splice sites
3' ss Seq
CAGCTCCTCTTTTCACTTAGGAG
3' ss Score
6.18
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GTACCCCATCCAGAACCCACGAGAAGCCTGTTATGGAGACATGGATGGCTACCCTGGAGTGCGGAATTACGGAGTGGTGGGTCCTGATGATCTCTACGATGTCTACTGTTATGCCGAAGACCTAAATG
Seq A exon
GAGAACTGTTCCTAGGTGCCCCTCCCGGCAAGCTGACGTGGGAGGAGGCTCGGGACTACTGTCTGGAACGCGGTGCTCAGATCGCTAGCACGGGCCAGCTATACGCGGCATGGAATGGCGGCTTGGACAGATGTAGCCCTGGCTGGCTGGCTGATGGCAGTGTGCGGTACCCCATCATCACGCCCAGCCAACGCTGTGGGGGAGGCCTGCCAGGAGTCAAGACCCTCTTCCTCTTTCCCAACCAGACTGGCTTCCCCAGCAAGCAGAACCGCTTCAATGTCTACTGCTTCCGAG
Seq C2 exon
ACTCTGCCCATCCCTCTGCCTTCTCTGAGGCCTCCAGCCCAGCCTCTGATGGACTAGAGGCCATTGTCACAGTGACAGAGAAGCTGGAGGAACTGCAGTTGCCTCAGGAAGCTGTGGAGAGCGAGTCTCGTGGGGCGATCTACTCCATCCCCATCACAGAAGATGGGGGAGGAGGAAGCTCTACCCCAGAAGACCCAGCAGAGGCCCCCAGGACTCCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018798-'11-21,'11-15,13-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.865
Domain overlap (PFAM):
C1:
PF0019312=Xlink=PD(38.5=84.1),PF0019312=Xlink=PU(0.1=0.0)
A:
PF0019312=Xlink=WD(100=98.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACGAGAAGCCTGTTATGG
R:
CTGGGGTAGAGCTTCCTCCTC
Band lengths:
302-596
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]