GgaEX6026051 @ galGal3
Exon Skipping
Gene
ENSGALG00000013237 | BCAN
Description
NA
Coordinates
chr25:887107-889169:+
Coord C1 exon
chr25:887107-887234
Coord A exon
chr25:887709-888002
Coord C2 exon
chr25:888940-889169
Length
294 bp
Sequences
Splice sites
3' ss Seq
CCTCCTTCCTTTCATTGCAGGGG
3' ss Score
11.47
5' ss Seq
GAGGTAACC
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTACCCCATCCACACCCCCCGCGAGGCGTGCTATGGAGACATGAATGGCTTCCCTGGGGTGAGGAACTACGGCGTGGTGGACCCGGAGGACATGTACGACGTGTACTGTTATGCCGAGGACGTGCCAG
Seq A exon
GGGAAATATTTTTGGAGACAGCCCCGGACAAGTTTACCCTGGAGGAGGCGGCGGCGCGGTGCCGGGCGCAGGGTGCGGTGCTGGCGAGCACGGGGCAGCTGTATGCAGCCTGGAGTGCAGGGTTGGATGCCTGCAACCCGGGCTGGCTGGCTGATGGCAGCGTCCGCTATCCCATCGTCACCCCGAGGGAGCGCTGTGGAGGAGCCCTGCCGGGTGTCAAAACCATCTTCCAGTTTCGCAACCAGACGGGATTCCCCGATGCCCAGAGCAGATACGATGCGTACTGCTACCGAG
Seq C2 exon
AAGGGACAAACTCTTTCCCTGAGGCTGCAGGAAAATATCAAGCCAGAGAGCCCGAGGGCCTCCAGGAGATTGTTACAGTGGCAGAAAAGCTGGAGGAGCTGCAGCTGCCCAAAGCGCAAGTGGAGATTGAGTCGCGAGGGGCTATATACGCCGTCCCTTTCTTTAAGGACGTGGCTGATGCTGAGCTGGAAAAGCCAAGCCTGTCCCCCGAAGACACCCGGCACCCCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013237-'7-6,'7-5,8-6=AN
Average complexity
A_C1
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.351
Domain overlap (PFAM):
C1:
PF0019312=Xlink=PD(38.5=84.1),PF0019312=Xlink=PU(0.1=0.0)
A:
PF0019312=Xlink=WD(100=98.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATGAATGGCTTCCCTGGG
R:
GGACAGGCTTGGCTTTTCCA
Band lengths:
297-591
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]