GgaEX6026051 @ galGal4
Exon Skipping
Gene
ENSGALG00000013237 | BCAN
Description
brevican [Source:HGNC Symbol;Acc:HGNC:23059]
Coordinates
chr25:499792-502053:+
Coord C1 exon
chr25:499792-499919
Coord A exon
chr25:500394-500687
Coord C2 exon
chr25:501625-502053
Length
294 bp
Sequences
Splice sites
3' ss Seq
CCTCCTTCCTTTCATTGCAGGGG
3' ss Score
11.47
5' ss Seq
GAGGTAACC
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTACCCCATCCACACCCCCCGCGAGGCGTGCTATGGAGACATGAATGGCTTCCCTGGGGTGAGGAACTACGGCGTGGTGGACCCGGAGGACATGTACGACGTGTACTGTTATGCCGAGGACGTGCCAG
Seq A exon
GGGAAATATTTTTGGAGACAGCCCCGGACAAGTTTACCCTGGAGGAGGCGGCGGCGCGGTGCCGGGCGCAGGGTGCGGTGCTGGCGAGCACGGGGCAGCTGTATGCAGCCTGGAGTGCAGGGTTGGATGCCTGCAACCCGGGCTGGCTGGCTGATGGCAGCGTCCGCTATCCCATCGTCACCCCGAGGGAGCGCTGTGGAGGAGCCCTGCCGGGTGTCAAAACCATCTTCCAGTTTCGCAACCAGACGGGATTCCCCGATGCCCAGAGCAGATACGATGCGTACTGCTACCGAG
Seq C2 exon
AAGGGACAAACTCTTTCCCTGAGGCTGCAGGAAAATATCAAGCCAGAGAGCCCGAGGGCCTCCAGGAGATTGTTACAGTGGCAGAAAAGCTGGAGGAGCTGCAGCTGCCCAAAGCGCAAGTGGAGATTGAGTCGCGAGGGGCTATATACGCCGTCCCTTTCTTTAAGGACGTGGCTGATGCTGAGCTGGAAAAGCCAAGCCTGTCCCCCGAAGACACCCGGCACCCCCCAGTAGATGCCTCCTCGTCCTCAGCACGAGGACATCACCCATCCTCAGCCGCCCCTTTCCCCACAGCCCCAGCCGTCCCCAAGGCAGGCGTCCCGCATAGCTGTGCTGCACAACCAGGCAGCCCATCCCCTGCAGACCAGGACGGGGCGACAGGGAAAGGTGGAAGGTGCGCAGAGGCCAGGCAAGAGCCATCCCGCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013237-'6-7,'6-5,7-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.701
Domain overlap (PFAM):
C1:
PF0019312=Xlink=PD(38.5=84.1),PF0019312=Xlink=PU(0.1=0.0)
A:
PF0019312=Xlink=WD(100=98.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACGTGTACTGTTATGCCG
R:
GAGGATGGGTGATGTCCTCGT
Band lengths:
307-601
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]