BtaEX0005371 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015789 | BCAN
Description
brevican [Source:HGNC Symbol;Acc:HGNC:23059]
Coordinates
chr3:14224411-14225781:-
Coord C1 exon
chr3:14225699-14225781
Coord A exon
chr3:14225192-14225336
Coord C2 exon
chr3:14224411-14224601
Length
145 bp
Sequences
Splice sites
3' ss Seq
TCCTCCCCCTGCCCTCCCAGCTC
3' ss Score
8.61
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
ATCGATACCGGGAGTACCAGTGGATCGGGCTCAATGACAGGACCATCGAAGGGGATTTCCTGTGGTCAGATGGCGTCCCCCTG
Seq A exon
CTCTATGAGAACTGGAACCCTGGGCAGCCAGACAGCTACTTCCTGTCCGGAGAGAACTGCGTGGTTATGGTGTGGCACGATCAGGGACAATGGAGTGATGTTCCCTGCAACTACCACCTGTCCTACACCTGCAAGATGGGGCTGG
Seq C2 exon
TGTCCTGTGGGCCCCCACCAGAGCTGCCCCTGGCTGAAGTGTTTGGCCGCCCACGGCTGCGCTATGAAGTCGACACAGTGCTTCGTTACCGGTGCCGGGAGGGGCTGACCCAGCGCAACCTACCATTGATCCGCTGCCAGGAGAATGGTCGCTGGGGGCTTCCCCAGATCTCCTGTGTGCCCCGCAGGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015789_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(25.5=100)
A:
PF0005916=Lectin_C=PD(42.5=91.8)
C2:
PF0008415=Sushi=WD(100=89.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCAGTGGATCGGGCTCAAT
R:
CAGGAGATCTGGGGAAGCCC
Band lengths:
244-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development