RnoEX0014317 @ rn6
Exon Skipping
Gene
ENSRNOG00000018798 | Bcan
Description
brevican [Source:RGD Symbol;Acc:2194]
Coordinates
chr2:187360431-187361417:-
Coord C1 exon
chr2:187361335-187361417
Coord A exon
chr2:187360857-187361001
Coord C2 exon
chr2:187360431-187360621
Length
145 bp
Sequences
Splice sites
3' ss Seq
CCTCCACTCCCCCTTCCCAGCTC
3' ss Score
8.59
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
Exon sequences
Seq C1 exon
ATCGATACAGGGAGTACCAGTGGATTGGGCTCAATGACAGGACCATCGAGGGTGACTTCCTGTGGTCAGATGGTGCCCCTCTG
Seq A exon
CTCTATGAAAACTGGAACCCTGGGCAGCCTGACAGCTACTTCCTGTCTGGGGAGAACTGTGTGGTCATGGTGTGGCATGACCAGGGACAGTGGAGTGATGTACCCTGCAACTACCACCTATCCTACACCTGCAAGATGGGGCTTG
Seq C2 exon
TGTCATGTGGACCTCCACCACAGCTGCCCCTGGCTCAAATATTTGGTCGCCCTCGGCTGCGCTACGCGGTGGACACTGTGCTTCGATATCGGTGCCGAGACGGGCTGGCCCAGCGCAACTTGCCGTTGATCCGCTGCCAGGAGAATGGGCTTTGGGAGGCCCCTCAGATTTCTTGCGTGCCCCGAAGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018798_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(25.5=100)
A:
PF0005916=Lectin_C=PD(42.5=91.8)
C2:
PF0008415=Sushi=WD(100=89.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAGTACCAGTGGATTGGG
R:
GCAAGAAATCTGAGGGGCCTC
Band lengths:
251-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]