GgaEX7011660 @ galGal4
Exon Skipping
Gene
ENSGALG00000013237 | BCAN
Description
brevican [Source:HGNC Symbol;Acc:HGNC:23059]
Coordinates
chr25:505837-506625:+
Coord C1 exon
chr25:505837-505919
Coord A exon
chr25:506153-506297
Coord C2 exon
chr25:506443-506625
Length
145 bp
Sequences
Splice sites
3' ss Seq
GCCCGTCCTGTGCTCCCCAGCTC
3' ss Score
7.91
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
AACAGTACCGCGAGTACCAATGGATCGGCCTCAACGACCGCACCATCGAGGGGGACTTCCAGTGGTCCGACGGCAGCCCCCTG
Seq A exon
CTCTATGAGAACTGGCACCCGGGGCAGCCCGACAGCTACTTCCTCTCCGGTGAGAACTGCGTGGTCATCGTGTGGCACGACGGGGGACAATGGAGCGATGTCCCCTGCAATTACCACCTCTCCTACACCTGCAAAATGGGGCTGG
Seq C2 exon
TGCAGTGCGGACCCCCCCCCACCGTCAGCAACGCCCGCGCCTTCGGCAAACCAAAGCAGCGCTACGAGATCGGCTCCATCACGCGCTACCACTGCCGCCACGGCTTCGCCCCGCGCCGCTCCCCCATCATCCGCTGCCGTGAGGATGGCATTTGGGAACGGCCTCAGCTCTCCTGCCGCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013237-'16-18,'16-16,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.048
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(25.5=100)
A:
PF0005916=Lectin_C=PD(42.5=91.8)
C2:
PF0008415=Sushi=WD(100=91.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTACCAATGGATCGGCCTCA
R:
AGGAGAGCTGAGGCCGTTC
Band lengths:
245-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]