MmuEX0007785 @ mm10
Exon Skipping
Gene
ENSMUSG00000004892 | Bcan
Description
brevican [Source:MGI Symbol;Acc:MGI:1096385]
Coordinates
chr3:87988272-87989250:-
Coord C1 exon
chr3:87989168-87989250
Coord A exon
chr3:87988693-87988837
Coord C2 exon
chr3:87988272-87988462
Length
145 bp
Sequences
Splice sites
3' ss Seq
CCTCCACTCCCCCTTCCCAGCTC
3' ss Score
8.59
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
Exon sequences
Seq C1 exon
ATCGATACCGGGAGTACCAGTGGATTGGGCTCAATGACAGGACCATCGAGGGTGACTTCTTGTGGTCAGATGGTGCCCCTCTG
Seq A exon
CTCTATGAAAACTGGAACCCTGGGCAGCCTGACAGCTACTTCCTGTCTGGGGAGAACTGTGTGGTCATGGTGTGGCATGACCAGGGACAGTGGAGTGATGTGCCCTGCAACTACCATCTATCCTACACCTGCAAGATGGGGCTTG
Seq C2 exon
TGTCCTGTGGGCCTCCACCACAGCTACCCCTGGCTCAAATATTTGGTCGCCCTCGGCTGCGCTACGCGGTGGATACTGTGCTTCGATATCGATGCCGAGACGGGCTGGCTCAGCGCAACCTGCCGTTGATCCGCTGCCAGGAGAATGGGCTTTGGGAGGCCCCTCAGATTTCCTGTGTACCCCGGAGGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004892_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(25.5=100)
A:
PF0005916=Lectin_C=PD(42.5=91.8)
C2:
PF0008415=Sushi=WD(100=89.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCAATGACAGGACCATCG
R:
TCCGGGGTACACAGGAAATCT
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types