DreEX6041373 @ danRer10
Exon Skipping
Gene
ENSDARG00000099412 | bcan
Description
brevican [Source:ZFIN;Acc:ZDB-GENE-030131-6045]
Coordinates
chr16:29379138-29380247:-
Coord C1 exon
chr16:29380165-29380247
Coord A exon
chr16:29379400-29379544
Coord C2 exon
chr16:29379138-29379323
Length
145 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTCTTTCTCTATCAGCTC
3' ss Score
9.98
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
Exon sequences
Seq C1 exon
ATAAATACAGGGAGTATCAGTGGACGGGCCTCAACGACAAAACAATTGAGGGAGATTTCCGTTGGTCAGATGGAAACCCTCTG
Seq A exon
CTCTATCAAAACTGGTATCGGGGTCAACCAGACAGCTACTTCCTATCAGGAGAGGACTGTGTTGTTATGGTGTGGTATGACGATGGCCGCTGGAGTGATATCCCCTGTAACTACCAGCTTTCCTACACCTGCAAAAAGGGCATTT
Seq C2 exon
CAGCATTCTGTGGCCAGCCCCCTCTTGTGCTGCATGCTAAGATGTTTGGACGCCGTCAGTTAAAGTACAGGGCGAATTCACAGGTGCGCTACTACTGTGAGTCAGGCTTCATTCAGAGACAGAACCCTATCATCACCTGTCAGAGCAATGGACTATGGGAGGAACCCAAAATCATGTGTTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099412-'12-13,'12-12,13-13=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(25.5=100)
A:
PF0005916=Lectin_C=PD(42.5=91.8)
C2:
PF0008415=Sushi=WD(100=90.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGGAGTATCAGTGGACGG
R:
GGTTCCTCCCATAGTCCATTGC
Band lengths:
243-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]