BtaEX0008088 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022777 | CDC42BPA
Description
Bos taurus CDC42 binding protein kinase alpha (DMPK-like) (CDC42BPA), mRNA. [Source:RefSeq mRNA;Acc:NM_001192937]
Coordinates
chr16:30740872-30763893:-
Coord C1 exon
chr16:30763817-30763893
Coord A exon
chr16:30744692-30744796
Coord C2 exon
chr16:30740872-30740955
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTCCTGACTTATTTTCCTAGACT
3' ss Score
6.97
5' ss Seq
AAGGTGCCT
5' ss Score
5.39
Exon sequences
Seq C1 exon
GTATAGAGCACCAAGACTCACAGCATTCTTTCTTGGCATTTTTGAATACGCCTACCGATGCTCTGGATCAATTTGAA
Seq A exon
ACTGATCCCGTTGAGAACACATATGTACGGAATCCGAACGTCAAGTTTTACATCCAGTCAAGGTCCACCTCTCCTTCCACATCTAGTGAAGCTGAGCCAGTTAAG
Seq C2 exon
ACTGTAGACTCTACTCCACTTCCAGTTCATACACCAACCTTAAGGAAAAAGGGATGCCCTGGTTCAACTGGCTTTCCATCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022777_MULTIEX1-3/3=C1-C2
Average complexity
ME(1-3[99=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=0.514 C2=0.521
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000029173fB1554
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATAGAGCACCAAGACTCACAGC
R:
TGGAAAGCCAGTTGAACCAGG
Band lengths:
155-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development