HsaEX0014071 @ hg19
Exon Skipping
Gene
ENSG00000143776 | CDC42BPA
Description
CDC42 binding protein kinase alpha (DMPK-like) [Source:HGNC Symbol;Acc:1737]
Coordinates
chr1:227235628-227257554:-
Coord C1 exon
chr1:227257478-227257554
Coord A exon
chr1:227239582-227239686
Coord C2 exon
chr1:227235628-227235711
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTCCCGACTTATTTTCCTAGACT
3' ss Score
6.62
5' ss Seq
AAGGTGCCT
5' ss Score
5.39
Exon sequences
Seq C1 exon
GTATAGAGCACCAAGACTCACAGCATTCTTTCTTGGCATTTTTGAATACGCCTACCGATGCTCTGGATCAATTTGAA
Seq A exon
ACTGATCCCGTTGAGAACACATATGTATGGAACCCGAGCGTCAAGTTTCACATCCAGTCACGGTCCACATCTCCTTCCACATCTAGTGAAGCTGAGCCAGTTAAG
Seq C2 exon
ACTGTAGACTCCACTCCACTTTCAGTTCACACACCAACCTTAAGGAAAAAAGGATGTCCTGGTTCAACTGGCTTTCCACCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143776_MULTIEX3-3/4=C1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=0.451 C2=0.583
Domain overlap (PFAM):
C1:
PF041117=APG6=FE(19.7=100)
A:
PF041117=APG6=PD(9.8=36.1)
C2:
NO
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATAGAGCACCAAGACTCACAGC
R:
TGGAAAGCCAGTTGAACCAGG
Band lengths:
155-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)