MmuEX6029640 @ mm10
Exon Skipping
Gene
ENSMUSG00000026490 | Cdc42bpa
Description
CDC42 binding protein kinase alpha [Source:MGI Symbol;Acc:MGI:2441841]
Coordinates
chr1:180123924-180134380:+
Coord C1 exon
chr1:180123924-180123962
Coord A exon
chr1:180130796-180130900
Coord C2 exon
chr1:180134297-180134380
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTCCTGATTTATTTTCCTAGACT
3' ss Score
7.29
5' ss Seq
AAGGTGCCT
5' ss Score
5.39
Exon sequences
Seq C1 exon
CGCTCTCCGTCCTGTACTCCAGCTAGCAAAGGCAGACGT
Seq A exon
ACTGATCCCGTTGACAACACTTACATACGGAACCCGAGCATCAAGTTTTACATCCAGTCAAGGCCCACATCTCCTTCCACAGCTAGTGAGGCTGAGCCAGTTAAG
Seq C2 exon
ATTGCAGACTGTGCTCCACTTCCAGCTCACACACCAACCTTAAGGAAAAAGGGATGCCCGGCTTCAACTGGCTTTCCACCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026490-'61-65,'61-64,62-65
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.058 A=0.296 C2=0.290
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCGTCCTGTACTCCAGC
R:
TGGAAAGCCAGTTGAAGCCG
Band lengths:
115-220
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types