GgaEX1014017 @ galGal4
Exon Skipping
Gene
ENSGALG00000009158 | CDC42BPA
Description
serine/threonine-protein kinase MRCK alpha [Source:RefSeq peptide;Acc:NP_001186372]
Coordinates
chr3:11756160-11765215:+
Coord C1 exon
chr3:11756160-11756236
Coord A exon
chr3:11764341-11764460
Coord C2 exon
chr3:11765135-11765215
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTCTGGAATTATTCTCCTAGATT
3' ss Score
5.15
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
GTGTAAAGCACCAAGACTCACAGAATTCTTTCTTGGCATTTTTGAATGCGCCTACCTCTGCTCTGGATCAATTTGAA
Seq A exon
ATTGATTCAGTTGAGAACTTTACATTATCCAATACACCATCACGGGATGAAGATACCAAGTCTCACCTCCATTCAAGATCAAGATCTCCTTCTACGGCTAGTGAAATTGAACCAATCGAG
Seq C2 exon
GTTACGGATCATCCTCCTCGATCAATTCACACACCAACCATGCGGACTGCGTATATTGGATCGGGACTCTCTGCACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009158_MULTIEX3-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.218 A=0.850 C2=0.802
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTAAAGCACCAAGACTCACAGA
R:
TTTGGTGCAGAGAGTCCCGAT
Band lengths:
157-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]