MmuEX6029640 @ mm9
Exon Skipping
Gene
ENSMUSG00000026490 | Cdc42bpa
Description
CDC42 binding protein kinase alpha [Source:MGI Symbol;Acc:MGI:2441841]
Coordinates
chr1:182047798-182064511:+
Coord C1 exon
chr1:182047798-182047874
Coord A exon
chr1:182060927-182061031
Coord C2 exon
chr1:182064428-182064511
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTCCTGATTTATTTTCCTAGACT
3' ss Score
7.29
5' ss Seq
AAGGTGCCT
5' ss Score
5.39
Exon sequences
Seq C1 exon
GTATAGAGCACCAAGACTCACAGCATTCTTTCTTGGCATTTTTGAATACGCCTACCGATGCTCTGGACCAATTTGAA
Seq A exon
ACTGATCCCGTTGACAACACTTACATACGGAACCCGAGCATCAAGTTTTACATCCAGTCAAGGCCCACATCTCCTTCCACAGCTAGTGAGGCTGAGCCAGTTAAG
Seq C2 exon
ATTGCAGACTGTGCTCCACTTCCAGCTCACACACCAACCTTAAGGAAAAAGGGATGCCCGGCTTCAACTGGCTTTCCACCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026490-'34-39,'34-38,38-39=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.296 C2=0.278
Domain overlap (PFAM):
C1:
PF041117=APG6=FE(22.6=100)
A:
NO
C2:
NO
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATAGAGCACCAAGACTCACAGC
R:
TGGAAAGCCAGTTGAAGCCG
Band lengths:
155-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: